PUBLICATIONS
Publications are also listed on Google Scholar and PubMed. If you cannot access any of the papers below, please email Brody.
ARTICLES
YL Chen, C Zhang, F Lucas, J Hadlock, BH Foy. 2026. Deep phenotyping of blood cell data reveals novel clinical biomarkers. medRxiv
N Laha, M Keebaugh, HC Liao, B Amankwaa, O Adesoye, A Pablo, WS Phipps, AN Hoofnagle, GS Baird, PC Mathias, BH Foy. 2026. Development and implementation of an AI system for clinical toxicology sign-outs. medRxiv.
BH Foy, KD Smith, OL Vargas, M Keebaugh, L Lu, AA Patel, S Akilesh, NG Hoffman. 2026. Evaluation of large-language models for structured feature extraction of anatomic and clinical pathology reports. Clinical Chemistry.
N Harish, C Zhang, YL Chen, BH Foy. 2025. Using routine laboratory tests to perform early prediction of urine culture results. medRxiv.
YL Chen, F Lucas, BH Foy. 2025. Leveraging hematologic single cell measurements for patient triage and outcome prediction. Journal of Applied Laboratory Medicine.
C Zhang, B Lam, F Lucas, BH Foy. 2025. Machine-learning and AI-based clinical decision support for modern hematology. Clinics in Laboratory Medicine.
KA Kooshesh, BH Foy, RA Baylis, K Gustafsson, DA Zlotoff, TG Neilan, DT Scadden. 2025. Adult thymectomy is associated with increased mortality risk from cancer but not cardiovascular disease. Blood Advances. 2024015286.
V Tozzo, R Petherbridge K James, S Hsu, C Michalopoulos, BH Foy, T Thaweethai, C Mow, J Maya, CB Camero, L Shook, KJ Gray, L Mauney JM Higgins, CE Powe. 2025. Hematologic dynamics during pregnancy and their associated with obstetric complications: a retrospective cohort study. medRxiv.
BH Foy✝, JCT Carlson, AD Aguirre, JM Higgins✝. 2025. Platelet-white cell ratio is more strongly associated with mortality than other common risk ratios derived from complete blood counts. Nature Communications. 16:1113.
BH Foy✝, R Petherbridge, MT Roth, C Zhang, DCD Souza, C Mow, HR Patel, CH Patel, SN Ho, E Lam, CE Power, RP Hasserjian, KJ Karczewski, V Tozzo, JM Higgins✝. 2025. Haematological setpoints are a stable and patient-specific deep phenotype. Nature. 637(8045):430-438
LM Yonker, O Badaki-Makun, B Alvarez-Carcamo, C Cross, Y Okuducu, L Appleman, J Greatorex, RE Onu, C Santos, R Petherbridge, BH Foy, D Cereaga, M Naiman, I Castro, L Haller, LB Guthrie, JM Higgins, KB Lewandrowski, D Irimia. 2024. Monocyte anisocytosis is associated with sepsis in children with suspected infection. Shock. PMID: 39749928
PK Bendapudi, BH Foy, SB Mueller, J Liu, LM Feingold, KE Burke, W Cruz, MY Chen, ES Lau, RL Goldberg, I Tatake, SC Wilkinson, BJ Carney, JR Stone, D Park, AR Avelino, S Hassan, C Andrzejewski, KN Ruby, KD Friedman, PAR Brunker, RK Leaf, JM Higgins, WH Dzik, JA Stefely, RS Makar. 2024. Recombinant ADAMTS13 for immune thrombotic thrombocytopenic purpura. New England Journal of Medicine. 390(18).
S Verbanck, RL Eddy, MJ McIntosh, G Parraga, BH Foy. 2024. Missing airways, ventilation defects and conductive airway physiology in asthma. European Respiratory Journal.
R Brewster, S Mathias, S Sarvode, D Unnikrishnan, D Rama, BH Foy✝, C Britto✝. 2024. A pragmatic calibration of the ROX index to predict outcome of nasal high-flow therapy in India. Journal of Critical Care. PMID: 38608348
KA Kooshesh, BH Foy, DB Sykes, K Gustafsson, DT Scadden. 2023. Health consequences of thymus removal in adults. New England Journal of Medicine. 389(5): 406-417. PMID: 37530823
DR Wilcox, ER Rudmann, E Ye, A Noori, C Magdamo, A Jain, H Alabsi, BH Foy, VA Triant, GK Robbins, MB Westover, S Das, SS Mukerji. 2023. Cognitive concerns are a risk factor for mortality in people with HIV and coronavirus disease 2019. AIDS. 37(10):1565. PMID: 37195278
BH Foy*, J Stefely*, PK Bendapudi, RP Hasserjian, H Al-Samkari, A Louissaint Jr, M Fitzpatrick, B Hutchison, C Mow, J Collins, H Patel, C Patel, N Patel, S Ho, RM Kaufman, W Dzik, JM Higgins, RS Makar. 2023. Computer vision quantitation of erythrocyte shape abnormalities provides diagnostic, prognostic, and mechanistic insight. Blood Advances. 2022008967. PMID: 37146262
BH Foy, K Burrage, I Turner. 2022. A meshfree radial basis function method for simulation of multi-dimensional conservation problems. Numerical Methods for Partial Differential Equations. 39(3):2600-2629.
PG Miller, GG Fell, BH Foy, AK Scherer, CJ Gibson, AS Sperling, BB Burugula, T Nakao, MM Uddin, H Warren, L Bry, O Pozdnyakova, MJ Frigault, AG Bick, D Neuberg, JM Higgins, MK Mansour, P Natarajan, AS Kim, JO Kitzman, BL Ebert. 2022. Clonal hematopoiesis of indeterminate potential and risk of death from COVID-19. Blood. 140(18): 1993-1997. PMID: 36096050
BH Foy, TM Sundt, JCT Carlson, AD Aguirre, JM Higgins. 2022. Human acute inflammatory recovery is defined by co-regulatory dynamics of white blood cell and platelet populations. Nature Communications. 13(1): 4705. PMID: 35995789
J Grune, AJM Lewis, M Yamazoe, M Hulsmans, D Rohde, L Xiao, S Zhang, C Ott, DM Calcagno, Y Zhou, K Timm, M Shanmuganathan, FE Pulous, MJ Schloss, BH Foy, D Capen, C Vinegoni, GR Wojtkiewicz, Y Iwamoto, T Grune, D Brown, JM Higgins, VM Ferreira, N Herring, KM Channon, S Neubauer, S Mayooran, VM Ferreira, KM Channon, DE Sosnovik, DJ Milan, FK Swirski, KR King, AD Aguirre, PT Ellinor, M Nahrendorf. 2022. Neutrophils incite and macrophages avert electrical storm after myocardial infarction. Nature Cardiovascular Research. 1(7): 649-664. PMID: 36034743
MJ Schloss, M Hulsmans, D Rohde, IH Lee, N Severe, BH Foy, FE Pulous, S Zhang, KD Kokkaliaris, V Frodermann, G Courties, C Yang, Y Iwamoto, AS Knudsen, CS McAlpine, M Yamazoe, SP Schmidt, GR Wojtkiewicz, GS Masson, K Gustaffson, D Capen, D Brown, JM Higgins, DT Scadden, P Libby, FK Swirski, K Naxerova, M Nahrendorf. 2022. B lymphocyte-derived acetylcholine limits steady-state and emergency hematopoiesis. Nature Immunology. 23(4): 605-618. PMID: 35352063
SB Verbanck, BH Foy. 2022. In asthma phase III slopes can result from structural heterogeneity of the bronchial tree. Journal of Applied Physiology. 132(4): 947-955. PMID: 35175103
PG Campbell, IB Steward, AC Sirotic, C Drovandi, BH Foy, GM Minett. Analysing the predictive capacity and dose-response of wellness in load monitoring. Journal of Sport Sciences. 1-9. PMID: 33404378
SS Mukerji, S Das, H Alabsi, LN Brenner, A Jain, C Magdamo, SI Collens, E Ye, K Keller, CL Boutros, MJ Leone, A Newhouse, BH Foy, MD Li, M Lang, YP Shao, W Ge, H Sun, VA Triant, J Kalpathy-Cramer, JM Higgins, J Rosand, GK Robbins, MB Westover. 2021. Prolonged intubation in patients with prior cerebrovascular disease and covid-19. Frontiers in Neurology. 12:416. PMID: 33897598
BH Foy, B Wahl, K Mehta, A Shet, GI Menon, C Britto. 2021. Comparing COVID-19 vaccine allocation strategies in India: a mathematical modelling study. International Journal of Infectious Diseases. 103: 431-438. PMID: 33388436
BH Foy, BP Goncalves, JM Higgins. 2020. Unravelling disease pathophysiology with mathematical modeling. Annual Review of Pathology: Mechanisms of Disease. 15: 371-394. PMID: 31977295
BH Foy, D Kay, S Siddiqui, CE Brightling, M Paiva, S Verbanck. 2020. Increased ventilation heterogeneity in asthma can be attributed to proximal bronchioles. European Respiratory Journal. 55(3). PMID: 31806713
BH Foy, A Li, JP McClung, R Ranganath, JM Higgins. 2020. Data-driven physiologic thresholds for iron deficiency associated with hematologic decline. American Journal of Hematology. 95(3): 302-309. PMID: 31849101
S Cremer, MJ Schloss C Vinegoni, BH Foy, S Zhang, D Rohde, M Hulsmans, P Fumene Feruglio, S Schmidt, G Wojtkiewicz, JM Higgins, R Weissleder, FK Swirski, M Nahrendorf. 2020. Diminished reactive hematopoiesis and cardiac inflammation in a mouse model of recurrent myocardial infarction. Journal of the American College of Cardiology. 75(8): 901-915. PMID: 32130926
BH Foy, CE Brightling, S Siddiqui. 2020. Proning reduces ventilation heterogeneity in patients with elevated BMI: implications for COVID-19 pneumonia management? ERJ Open Research. 6(2). PMID: 32685437
BH Foy, S Natarajan, A Munawar, M Soares, J Thorpe, J Owers-Bradley, S Siddiqui. 2020. Characterising the role of small airways in severe asthma using low frequency forced oscillations: A combined computational and clinical approach. Respiratory Medicine. 10622. PMID: 32843165
BH Foy, JCT Carlson, E Reinertsen, R Padros I Valls, R Pallares Lopez, E Palanques-Tost, C Mow, MB Westover, AD Aguirre, JM Higgins. 2020. Association of red blood cell distribution width with mortality risk in hospitalized adults with SARS-CoV-2 infection. JAMA Network Open. 3(9):e2022058. PMID: 32965501
BH Foy, D Kay. 2019. A computationally tractable scheme for simulation of the human pulmonary system. Journal of Computational Physics. 388: 371-393.
AJ Bell, BH Foy, M Richardson, A Singapuri, E Mirkes, M van den Berge, D Kay, CE Brightling, AN Gorban, CJ Galban, S Siddiqui. 2019. Functional CT imaging for identification of the spatial determinants of small-airways disease in adults with asthma. Journal of Allergy and Clinical Immunology. 144(1): 83-93. PMID: 30682455
BH Foy, M Soares, R Bordas, M Richardson, AJ Bell, A Singapuri, B Hargadon, CE Brightling, K Burrowes, D Kay, J Owers-Bradley, S Siddiqui. 2019. Lung computational models and the role of the small airways in asthma. American Journal of Respiratory and Critical Care Medicine. 200(8): 982-991. PMID: 31106566
BH Foy, S Gonem, CE Brightling, S Siddiqui, D Kay. 2018. Modelling the effect of gravity on inert-gas washout outputs. Physiological Reports. 6(10):e13709. PMID: 29845761
BH Foy, P Perre, I Turner. 2017. The meshfree finite volume method with application to multi-phase porous media models. Journal of Computational Physics. 333: 369-386
BH Foy, R Bordas, D Kay. 2017. Modelling responses of the inert-gas washout and MRI to bronchoconstriction. Respiratory Physiology and Neurobiology. 235: 8-17. PMID: 27677404
BH Foy, D Kay. 2017. A computational comparison of the multiple-breath washout and forced oscillation technique as markers of bronchoconstriction. Respiratory Physiology and Neurobiology. 240: 61-69. PMID: 28300726
* First authors contributed equally
✝ Corresponding authors
EDITORIAL
BH Foy, B Wahl. 2021. How do we best relax control measures as vaccine coverage for SARS-CoV-2 rises? Lancet Regional Health - Western Pacific. 15.
BH Foy, S Siddiqui. 2021. Shifting the focus to measuring early disease in the sm(all) airways. Journal of Applied Physiology. 131(6): 1845-1846